Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THCA | rs1763608 | chr1:16336384 | G/A | 1.53E-11 | 487 | 15.2 | 18.28 | 12.63 | KM Plot |
THCA | rs1763612 | chr1:16332571 | A/G | 1.12E-11 | 490 | 12.63 | 18.63 | 15.17 | KM Plot |
THCA | rs1763613 | chr1:16331909 | A/C | 2.99E-5 | 490 | 13.72 | 16.37 | 15.83 | KM Plot |
THCA | rs1763616 | chr1:16330901 | C/T | 1.12E-11 | 490 | 15.17 | 18.63 | 12.63 | KM Plot |
THCA | rs1763631 | chr1:16311674 | C/T | 1.93E-9 | 488 | 15.17 | 18.28 | 13.23 | KM Plot |
THCA | rs17643342 | chr8:8771602 | C/G | 1.43E-5 | 490 | 15.48 | 18.77 | 13.83 | KM Plot |
THCA | rs17669452 | chr8:8260079 | G/A | 5.87E-8 | 479 | 15.77 | 17.8 | 9.7 | KM Plot |
THCA | rs17673227 | chr19:58303632 | G/A | 0.000239 | 473 | 16.08 | 16.3 | 15.13 | KM Plot |
THCA | rs17680741 | chr10:82251514 | T/C | 0.000238 | 484 | 16.3 | 15.3 | 16.85 | KM Plot |
THCA | rs1771747 | chr6:119167117 | C/T | 0.000264 | 484 | 16.37 | 14.23 | 21.77 | KM Plot |
THCA | rs17723197 | chr11:45048105 | T/C | 3.6E-5 | 479 | 14.97 | 19.23 | 12.1 | KM Plot |
THCA | rs17727044 | chr10:104821256 | A/T | 6.38E-9 | 488 | 15.3 | 17.58 | 32.1 | KM Plot |
THCA | rs17727391 | chr10:104836101 | C/A | 5.02E-9 | 490 | 15.23 | 17.68 | 32.1 | KM Plot |
THCA | rs17729286 | chr4:1101148 | C/A | 3.88E-9 | 483 | 16.13 | 15.57 | 32.1 | KM Plot |
THCA | rs1773046 | chr9:15865546 | A/G | 0.000205 | 489 | 12.65 | 15.9 | 15.93 | KM Plot |